Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs34728236 | chr3:48259108 | A/G | 1.46E-5 | 496 | 37.75 | 37.6 | 21.12 | KM Plot |
KIRC | rs34737312 | chr2:67628282 | G/A | 2.18E-7 | 504 | 37.33 | 37.77 | 2.03 | KM Plot |
KIRC | rs34749846 | chr3:48347168 | T/G | 7.7E-6 | 504 | 37.6 | 37.77 | 19.13 | KM Plot |
KIRC | rs34762142 | chr3:48279814 | A/AC | 1.74E-5 | 501 | 37.7 | 37.6 | 19.13 | KM Plot |
KIRC | rs34770320 | chr6:25822134 | GA/G | 0.00013 | 507 | 37.77 | 29.9 | 4.1 | KM Plot |
KIRC | rs34775006 | chr11:125435724 | G/GT | 6.33E-6 | 490 | 1.43 | 37.7 | 37.03 | KM Plot |
KIRC | rs34791189 | chr6:26035806 | G/A | 9.23E-9 | 506 | 37.67 | 35.4 | 3.37 | KM Plot |
KIRC | rs34804024 | chr6:25925496 | C/T | 0.0001 | 506 | 37.77 | 31.53 | 1.4 | KM Plot |
KIRC | rs34823385 | chr18:12610993 | G/T | 9.94E-5 | 504 | 38.1 | 37.5 | 22.83 | KM Plot |
KIRC | rs34885035 | chr3:48297992 | TG/T | 1.6E-5 | 497 | 37.75 | 37.73 | 21.12 | KM Plot |
KIRC | rs34946886 | chr3:48338487 | A/G | 4.08E-5 | 505 | 37.6 | 37.77 | 21.12 | KM Plot |
KIRC | rs34997300 | chr2:67593288 | C/T | 2.25E-7 | 507 | 37.35 | 37.73 | 2.03 | KM Plot |
KIRC | rs35002490 | chr2:67670450 | G/A | 2.4E-7 | 502 | 37.42 | 37.7 | 2.03 | KM Plot |
KIRC | rs35057178 | chr1:117668307 | G/A | 3.09E-7 | 504 | 37.03 | 40.63 | 3.37 | KM Plot |
KIRC | rs35116528 | chr6:25975669 | A/G | 2.75E-8 | 496 | 37.6 | 36.28 | 2.38 | KM Plot |